11 sty 2016 BWAIf the read has a chimeric alignment, the paired or the top hit uses soft clipping and is marked with neither 0x800 nor 0x100 bits.. 16 kwi 2014 sequence length. - Finds larger gaps. - Faster! Generally supersedes. BWA-SW ... soft clipping (not-aligned).. ... aligned with BWA MEM using the following options: t: number of threads Y: use soft clipping for supplementary alignments R: read group header line info. 63b95dad73 xilicata
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